A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
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VirusSeq export from CanCOGeN template: automate addition of % symbol to "coverage" value #232
In the VirusSeq export from the CanCOGeN template, the breadth of coverage value is exported as a string.
The VirusSeq schema requires a "%" symbol after the value, which currently has to be inserted manually by the curator.
The % symbol is part of the field definition and so not inserted in the DH or in NML LIMS.
Can we automate the addition of the "%" symbol after the value in the breadth of coverage export? e.g. 89 in the DH appears as 89% under breadth of coverage in the VirusSeq export?
ddooley
commented
2 years ago
In the VirusSeq export from the CanCOGeN template, the breadth of coverage value is exported as a string.
The VirusSeq schema requires a "%" symbol after the value, which currently has to be inserted manually by the curator. The % symbol is part of the field definition and so not inserted in the DH or in NML LIMS.
Can we automate the addition of the "%" symbol after the value in the breadth of coverage export? e.g. 89 in the DH appears as 89% under breadth of coverage in the VirusSeq export?