A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
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CanCOGeN template: Order of new fields in LIMS export #241
We just added a new field called "case ID", and renamed 2 previous fields which are now called "Related specimen relationship type" and "Related specimen primary ID". Because they have official NML export names (capitalized) they need to appear in special places in the output.
Can "PH_CASE_ID" please appear in the output after "PH_ID_NUMBER_PRIMARY", followed by "PH_RELATED_PRIMARY_ID"?
e.g.
PH_ID_NUMBER_PRIMARY
PH_CASE_ID
PH_RELATED_PRIMARY_ID
Can "PH_RELATED_RELATIONSHIP_TYPE" appear after "PH_SPECIMEN_TYPE"?
ddooley
commented
2 years ago
We just added a new field called "case ID", and renamed 2 previous fields which are now called "Related specimen relationship type" and "Related specimen primary ID". Because they have official NML export names (capitalized) they need to appear in special places in the output.
Can "PH_CASE_ID" please appear in the output after "PH_ID_NUMBER_PRIMARY", followed by "PH_RELATED_PRIMARY_ID"? e.g. PH_ID_NUMBER_PRIMARY PH_CASE_ID PH_RELATED_PRIMARY_ID
Can "PH_RELATED_RELATIONSHIP_TYPE" appear after "PH_SPECIMEN_TYPE"?
Thanks!