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cidgoh / DataHarmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
MIT License
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Usage notes for linkml-datastructure branch? #264

Closed turbomam closed 2 years ago

turbomam commented 2 years ago

I'm thinking about retiring the LinkML->data.tsv converter I wrote for NMDC in the next month or so.

The documentation/README for the master branch is pretty good. Is there anything like that for linkml-datastructure?

ddooley commented 2 years ago

No comparable documentation yet though the functionality is expected to deviate in only minor ways so I'm expecting most documentation to be adapted with field name changes basically and a few new columns. However I have to do one more development push to get the last 20% of functionality moved over to linkml-datastructure.

Are you speaking of retiring it in conjunction with having the linkml-datastructure version up and running? Or is it that the need to work on final linkml MiXS standards is easing off?

ddooley commented 2 years ago

Documentation is up at https://github.com/cidgoh/DataHarmonizer/wiki/DataHarmonizer-Templates and https://github.com/cidgoh/DataHarmonizer/wiki/Managing-schema.yaml so I am closing this.