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cidgoh / DataHarmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
MIT License
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Quality Control Check: GISAID Export #272

Closed cmrn-rhi closed 2 years ago

cmrn-rhi commented 2 years ago

Don't have exact details but heard there have been some issue(s) using the GISAID export so I think one of us should do a quality control check on this feature to see if there are any hiccups we can catch.

ddooley commented 2 years ago

Is this still an issue?

cmrn-rhi commented 2 years ago

@griffie have you happened to do a GISAID export check during recent quality control testing?

griffie commented 2 years ago

Was that issue from the Data Flow convos? I did a check before we submitted the Gigascience paper, and I think it was looking fine to me at the time. We've tweaked it since we first launched the DH at the beginning of the pandemic so those issues have hopefully been addressed. If you have more details, that would be helpful.

cmrn-rhi commented 2 years ago

I think this was a comment that stemmed from a NML meeting back in February. So I think if you've checked it out since then we're fine to close this.