look for `slot_group` instead of `is_a` in linkml model

cidgoh / DataHarmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.

MIT License

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look for `slot_group` instead of `is_a` in linkml model #279

Closed sujaypatil96 closed 2 years ago

sujaypatil96 commented 2 years ago

Replaced is_a with slot_group.

ddooley commented 2 years ago

I guess I need to test this with an updated /template/MIxS/source/mixs.yaml file?

sujaypatil96 commented 2 years ago

Ah yes. That's right. Either that or I've updated this branch with a copy of the NMDC schema that has this new semantics, _slotgroup, rank, etc. and you can use that to test this change?

ddooley commented 2 years ago

I will try with your NMDC schema. Also if slot_group hasn't been defined, should the "'if (is_a' in field) " be a fallback?