for https://github.com/cidgoh/DataHarmonizer/issues/281

cidgoh / DataHarmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.

MIT License

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for https://github.com/cidgoh/DataHarmonizer/issues/281 #287

Closed turbomam closed 2 years ago

turbomam commented 2 years ago

for https://github.com/cidgoh/DataHarmonizer/issues/281

Illustrates broken validation button
always pulls latest NMDC DH LinkML file
new nmdc Makefile rule illustrates smaller size when the entire MIxS model is not included
tweaks to requirements.txt

ddooley commented 2 years ago

On macs "brew install wget" is required ... so I guess wget is a requirement?

turbomam commented 2 years ago

yeah, or we could switch to curl

ddooley commented 2 years ago

I think validation button may be fixed now with a commit I just did. A bit of an obscure function call scope issue.

Looks like wget parameters need a reorder for Mac OS. I adjusted on a separate commit.

Seems to be an error in latest linkml.py sort when applied to class with empty slots in MIxS. Just looking into that.