A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
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Canadian MPX template: Change position of SUBMITTED_RESLT fields in NML-LIMS export output #331
In the Canadian MPX template, the diagnostic PCR fields (each test has a gene target and corresponding CT value) are output in the NML-LIMS export as SUBMITTED_RESLT fields.
They are capitalized, so can we move them in the LIMS output to just after PH_BIOINFORMATICS_PROTOCOL?
There should be 10 SUBMITTED_RESLT fields in total to be moved.
ddooley
commented
2 years ago
In the Canadian MPX template, the diagnostic PCR fields (each test has a gene target and corresponding CT value) are output in the NML-LIMS export as SUBMITTED_RESLT fields. They are capitalized, so can we move them in the LIMS output to just after PH_BIOINFORMATICS_PROTOCOL?
There should be 10 SUBMITTED_RESLT fields in total to be moved.