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cidgoh / GRDI_AMR_One_Health

A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
MIT License
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CTR: [picklist correction for AMR_laboratory_typing_platform] #27

Closed rahatzaheer closed 1 year ago

rahatzaheer commented 1 year ago
## New Picklist Term(s) ### REQUIRED - Current Term Information: Current picklist is relevant to "AMR_phenotype" instead of "AMR_laboratory_typing_platform" Associated Field(s): AMR_laboratory_typing_platform Term Label: Antibiotic resistance not defined [GENEPIO:0002040] Intermediate antimicrobial phenotype [ARO:3004300] Indeterminate antimicrobial phenotype [GENEPIO:0100585] Nonsusceptible antimicrobial phenotype [ARO:3004303] Resistant antimicrobial phenotype [ARO:3004301] Susceptible antimicrobial phenotype [ARO:3004302] Susceptible dose dependent antimicrobial phenotype [ARO:3004304] Not Applicable [GENEPIO:0001619] Not Collected [GENEPIO:0001620] Not Provided [GENEPIO:0001668] Missing [GENEPIO:0001618] Restricted Access [GENEPIO:0001810] Ontology ID or PURL: ### CHANGE REQUESTS: Associated Field(s): AMR_laboratory_typing_platform Term Label: BIOMIC - Giles Scientific USA Microscan [ARO:3004400] Phoenix [ARO:3004401] Sensitire [ARO:3004402] Vitek System [ARO:3004403] Not Applicable [GENEPIO:0001619] Not Collected [GENEPIO:0001620] Not Provided [GENEPIO:0001668] Missing [GENEPIO:0001618] Restricted Access [GENEPIO:0001810] Definition/Description: Synonyms or alternative labels: Additional Comments (not an annotation): Contributor Attribution:
griffie commented 1 year ago

Thanks @rahatzaheer we'll get this platform added to the picklist soon!

griffie commented 1 year ago

Added BIOMIC as platform and corrected picklists in template 7.6.4