A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
Merged table columns for ceftazidime-clavulanic_acid are incorrect and don't reflect the AMR tab layout. JD (ceftazidime-clavulanic_acid_measurement_sign) should be the one in JF (ceftazidime-clavulanic_acid_measurement) and JE is empty when it should have the measurement_units column imported.
Specification Changes:
Field
Change
field
Version Tracking:
Excel Template, Reference Guides, Curation SOP
x = # = N/A
y = # = N/A
z = # = Fixing some columns in the merged tab
Template Fixes:
ceftazidime-clavulanic_acid
are incorrect and don't reflect the AMR tab layout. JD (ceftazidime-clavulanic_acid_measurement_sign
) should be the one in JF (ceftazidime-clavulanic_acid_measurement
) and JE is empty when it should have themeasurement_units
column imported.Specification Changes:
field
Version Tracking:
Excel Template, Reference Guides, Curation SOP
x = # = N/A y = # = N/A z = # = Fixing some columns in the merged tab
New Term SOP N/A unless indicated.