8.8.7 - release note tracking

[cmrn-rhi]

Template Fixes:

• Additional, unwanted spaces trimmed from host (common name) picklist terms (e.g. between term label and term ID).

Specification Changes:

Field	Change
presampling_activity	NEW PICKLIST IDs: Certified humane animal husbandry practices [GENEPIO:0100894], Conventional farming practices [GENEPIO:0100895]
specimen_processing	NEW PICKLIST Definition: Samples pooled [OBI:0600016]
geo_loc_name (state/province/region)	NEW PICKLIST IDs: Atlantic region (Canada) [wikidata:Q246972], Central region (Canada) [wikidata:Q1048064], Northern region (Canada) [wikidata:Q764146], Pacific region (Canada) [wikidata:Q122953299], Prairie region (Canada) [wikidata:Q1364746]
environmental_site	NEW PICKLIST IDs: Pigsty [ENVO:03501413], Dairy farm [ENVO:03501416]
animal_or_plant_population	NEW PICKLIST IDs/Definitions: Wildlife [FOODON:00004503], Wild bird [FOODON:00004505]; NEW PICKLIST ID: Seabird [FOODON:00004504]
environmental_material	NEW PICKLIST IDs/Definitions: Dead haul trailer [GENEPIO:0100896], Live haul trailer [GENEPIO:0100897]; NEW PICKLIST IDs: Bulk tank [ENVO:03501379], Nest [ENVO:03501432]; NEW PICKLIST LABEL: Contaminated water [ENVO:00002186]
body_product	NEW PICKLIST IDs: Digestive tract substance [GENEPIO:0100898], Caecal content [GENEPIO:0100899], Intestinal content [GENEPIO:0100900], Stomach content [GENEPIO:0100901]; NEW DEFINITIONS: Fecal composite, Feces (fresh), Feces (environmental)
anatomical_part	NEW PICKLIST ID: Fish vent [GENEPIO:0100902]
food_product	NEW PICKLIST ID: Compound feed premix [FOODON:00004323], Compound feed premix (medicated) [FOODON:00004324], Animal feed ingredient [FOODON:00004322], Potato [FOODON:03315354]
food_product_properties	NEW PICKLIST IDs: Meat (with bone) [FOODON:02010116], Meat (with skin) [FOODON:02010111]
food_product_production_stream	NEW FIELD changes: production_stream label changed to food_product_production_stream; slight adjustments to definition; updated example; REMOVED PICKLIST VALUES: Food animal production stream [FOODON:03000450], Food product production stream [FOODON:03000457]; NEW PICKLIST IDs: Beef cattle production stream [FOODON:03000452], Broiler chicken production stream [FOODON:03000455], Dairy cattle production stream [FOODON:03000453], Layer chicken production stream [FOODON:03000456], Egg production stream [FOODON:03000458], Meat production stream [FOODON:03000460], Milk production stream [FOODON:03000459], NEW PICKLIST LABEL & ID: Veal meat production stream [FOODON:03000461],
host (common name)	NEW PICKLIST ID: Seabird [FOODON:00004504]

Version Tracking:

Excel Template, Reference Guides, Curation SOP

x = 8 = Field relabeled y = 8 = New value/picklist IDs z = 7 = New definitions

New Term SOP update.

Template To-Dos

• [x] Update IDs
  • [x] Excel Template
  • [x] DH Template
• [x] Update production_stream -> food_product_production_stream field label
  • [x] Excel Template
  • [x] DH Template

[cmrn-rhi]

Update issue request protocol

Approved in workgroup meeting 2023-10-17.

• [x] Convert issue templates to issue forms
  • [x] Specification - Change Field Request
  • [x] Specification - Change Term Request
  • [x] Specification - New Term Request (Bulk)
  • [x] Specification - New Term Request
• [x] Update protocol document images and text to accommodate changes.

[cbarcl01]

Release https://github.com/cidgoh/GRDI_AMR_One_Health/releases/tag/v8.8.7