cidgoh / GRDI_AMR_One_Health

A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.

MIT License

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NTR: Research > Survey #5

Closed andscoaafc closed 1 year ago

andscoaafc commented 1 year ago

AMR-GRDI Specification - New Term Request (NTR)

May request multiple terms in a single issue - delete the fields irrelevant to your request.

Picklist Item(s)

Associated Field(s): purpose_of_sampling

Label: Research > Survey Definition/Description: Survey study conducted for research purposes outside of a mandated requirement. Definition Source: Synonyms or alternative labels: Additional Comments (not an annotation):

Contributor Attribution: Andrew Scott (AAFC)

griffie commented 1 year ago

Hi Andrew - thanks for trying out the new term request system! For this term, when you say "survey study", do you mean the same kind of thing as the Surveillance terms we already have (baseline or targeted) but it's for for research rather than for operational purposes (like as opposed to public health surveillance or monitoring of sentinel sites)?

andscoaafc commented 1 year ago

Yes, for research instead of the types of surveys that PHAC and CFIA do... an example of the type we do... Distribution and diversity of Escherichia coli populations in the South Nation River drainage basin, eastern Ontario, Canada. Lyautey E, Lu Z, Lapen DR, Wilkes G, Scott A, Berkers T, Edge TA, Topp E. Appl Environ Microbiol. 2010 Mar;76(5):1486-96. doi: 10.1128/AEM.02288-09. Epub 2009 Dec 28. PMID: 20038693

griffie commented 1 year ago

We've added "Survey study" under Research in the "purpose of sampling" field.

How does that sound?