A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
[x] Include "Contents:" section that lists the files and their individual version information
Data Collection Template #.#.# Field and Term Reference Guides #.#.# Curation Standard Operating Procedure (SOP) #.#.# DataHarmonizer Download and Operation Instructions (SOP) #.# New Term Request Standard Operating Procedure (SOP) #.#
[x] Include "Updates:" section with important information like "fixes", new fields, and a table of fields and their associated changes (e.g., picklist updates, ID/label changes, etc.).
Versioning 10.0.0
Incrementing up one point for any number of changes.
Repository Release
x.y.z
Version Tracking
tab (note: the latest version should be consistent across the SOPs, reference guides and templates)x.y.z
(same as template)x.y
(same as template, minus "z" changes since those don't come up in the protocol")x.y
(independent versioning since changes to the specification/template doesn't impact this protocol)GRDI-AMR specification package #.#.#
v#.#.#
(create a new tag)Release Notes
- referencing applicable GitHub#issue
release notes