a few SARS-CoV-2 specifics hard coded in data_parser.py

cidgoh / VIRUS-MVP

VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and globally.

https://virusmvp.org/

MIT License

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a few SARS-CoV-2 specifics hard coded in data_parser.py #180

Closed anwarMZ closed 9 months ago

anwarMZ commented 9 months ago

Replaced following

617 last_gene_seen = "3' UTR

first_gene = list(gene_start_positions)[0]
last_gene = list(gene_start_positions)[-1]
last_gene_seen = last_gene

624 if gene in {"5' UTR", "3' UTR"}:

if gene in {last_gene, first_gene}:

ivansg44 commented 9 months ago

Duplicate of #170