VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and globally.
So far, successfully processed a stub dataset of three different sample types (lineage, time series, and waste waster). Have not yet merged new nf-ncov-voc to test updating files. The code now retrieves sample group names from the new gvf file header instead of the filename. Will need to modify code to get sample group name from uploaded files as well.
Future update -> increase size of reference dataset before we can put out an official release
So far, successfully processed a stub dataset of three different sample types (lineage, time series, and waste waster). Have not yet merged new nf-ncov-voc to test updating files. The code now retrieves sample group names from the new gvf file header instead of the filename. Will need to modify code to get sample group name from uploaded files as well.
Future update -> increase size of reference dataset before we can put out an official release