``ontofetch.py`` not returning all contents under specified root

cidgoh / geem

Genomic Epidemiology Entity Mart

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Closed ivansg44 closed 4 years ago

ivansg44 commented 5 years ago

Try running ontofetch.py with the following arguments:

http://purl.obolibrary.org/obo/foodon.owl -r http://purl.obolibrary.org/obo/BFO_0000001

Observe "food material", and some of its children (e.g., seafood product), were not fetched in the resulting output.

Now try:

http://purl.obolibrary.org/obo/foodon.owl -r http://purl.obolibrary.org/obo/FOODON_00002403.

Observe seafood product was now fetched, but other children (e.g., baked beans (dish) were not.

ddooley commented 4 years ago