A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Map the alias_key.json from Pango-designations to map the aliases to long-names sub-lineages for easier visualization and reading. Add this to GVF files as well with a new pair
Map the alias_key.json from Pango-designations to map the aliases to long-names sub-lineages for easier visualization and reading. Add this to GVF files as well with a new pair