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cidgoh / nf-ncov-voc

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
MIT License
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Add alias to the sub-lineages #100

Closed anwarMZ closed 1 year ago

anwarMZ commented 1 year ago

Map the alias_key.json from Pango-designations to map the aliases to long-names sub-lineages for easier visualization and reading. Add this to GVF files as well with a new pair

anwarMZ commented 1 year ago

add another key/pair value viral_lineage_alias=value e.g., viral_lineage=B.1.1.529.5.3.1.1.1.1 will have viral_lineage_alias=BQ