Updating list of variants, omicron sub-lineages and metadata headers

cidgoh / nf-ncov-voc

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

MIT License

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Updating list of variants, omicron sub-lineages and metadata headers #105

Closed anwarMZ closed 1 year ago

anwarMZ commented 1 year ago

Updates

Aliases added to the lineages parsed.
Omicron sub-lineage pattern added to variants list
Updated headers in metadata parsing

anwarMZ commented 1 year ago

Added status tag in variants file to differentiate between currently_circulating and de-escalated variants