A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
MIT License
5
stars
5
forks
source link
parse constellations file for gene and protein names; who_variants.ts… #109
In the constellations parsing function, I'm only looking at the first amino acid mentioned in the HGVS name for multiple amino acids for now: can adjust to check all amino acids if needed
…v works with Omicron