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cidgoh / nf-ncov-voc

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
MIT License
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Missing 'ID' attribute #132

Closed miseminger closed 1 year ago

miseminger commented 1 year ago

The "ID" attribute is currently only added to the GVF by addfunctionalinfo2gvf.py, because it's based on the comb_mutation attribute from the functional annotations file. It shouldn't affect the visualization to have it empty (I think--I need to check with Ivan) but I will need to update it to fill in an ID for all GVF outputs because it's required as part of the standard GVF format. This means that the IDs may not be consistent through different versions of the same GVF.

miseminger commented 1 year ago

-"ID" attribute is unused in visualization -updated ID in addfunctions2gvf.py in 134beeb