Virus-MVP tasks (Madeline)

cidgoh / nf-ncov-voc

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

MIT License

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Virus-MVP tasks (Madeline) #153

Closed miseminger closed 6 months ago

miseminger commented 7 months ago

[x] if no index provided, don't make logfile
[x] if index provided, save only (new mutations and new lineage names)
[x] change logfile format to be: | mutation name / alias name | hgvs name | lineages |