A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
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need all empty #attributes key-pairs to be "n/a", not empty strings #159
The "variant" attr is n/a in time series data
But blank in wastewater
This leads to an error in viz because it only treats n/a as null vals.
so if the data type is n/a, variant attribute should get n/a value
from Slack:
The "variant" attr is n/a in time series data But blank in wastewater This leads to an error in viz because it only treats n/a as null vals. so if the data type is n/a, variant attribute should get n/a value