A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Looks like there was a hidden key in the INFO column called 'nan' with no value attached. I made a requirement that only string type keys in 'INFO' be processed and it seems to have solved it.
Looks like there was a hidden key in the INFO column called 'nan' with no value attached. I made a requirement that only string type keys in 'INFO' be processed and it seems to have solved it.