A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
parse_sample_size.py might not return the result in the right way for Nextflow (output of a function, not of main)--will restructure this code if needed!
parse_sample_size.py might not return the result in the right way for Nextflow (output of a function, not of main)--will restructure this code if needed!