A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
MIT License
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Summarized Surveillance reports in PDF/HTML format #84
In addition to current surveillance reports generated in TSV format, a PDF/HTML based summarized format will provide better resolution to users.