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cidgoh / pathogen-genomics-package

This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
MIT License
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CanCOGeN Template - NML LIMS Export #13

Open GH-Emily opened 11 months ago

GH-Emily commented 11 months ago

I believe that data entered more than one time in the vaccination fields that are concatenated into the PH_VACCINATION_HISTORY field is getting unintentionally omitted from the NML LIMS dataharmonizer export from the CanCOGeN template.

When, for example:

Astrazeneca (Vaczevria) is entered for more than one vaccination dose name

the result is:

<Host Vaccination Status>;Astrazeneca (Vaxzevria);2022-11-01;2023-01-01;2023-03-01;2023-06-01;<Vaccination History>

rather than the expected:

<Host Vaccination Status>;Astrazeneca (Vaxzevria);2022-11-01;Astrazeneca (Vaxzevria);2023-01-01;Astrazeneca (Vaxzevria);2023-03-01;Astrazeneca (Vaxzevria);2023-06-01;<Vaccination History>

The same is occurring when the same date is used for one or more vaccination doses.

Thank you!