cio-abcd / variantinterpretation

Collaborative Interpretation-Pipeline workflow based on nf-core pipeline structure
MIT License
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set configuration variables for continuous integration #15

Closed feiloo closed 11 months ago

feiloo commented 1 year ago

PR checklist

Changes

add a test_ukb.config to enable ci testing on a ukb testserver. additionally set some needed configuration variables

sci-kai commented 1 year ago

The CI test seems to work great. Before merging, we should add some documentation about the test dataset in the README.md. This should include: Sample, size (no of variants), assay/kit, workflow with version for creating VCF files, type (here: tumor-only sequencing).

biolancer commented 11 months ago

After discussion on the 31th august, this PR remains on hold.