Closed feiloo closed 11 months ago
The CI test seems to work great. Before merging, we should add some documentation about the test dataset in the README.md
.
This should include: Sample, size (no of variants), assay/kit, workflow with version for creating VCF files, type (here: tumor-only sequencing).
After discussion on the 31th august, this PR remains on hold.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).Changes
add a test_ukb.config to enable ci testing on a ukb testserver. additionally set some needed configuration variables