In the final report, the allele fraction needs to be reported for clinical investigations.
Depending on the variant caller there are different fields which could contain the allele frequency.
We need proper checks for detecting the allele frequency in the VCF and some configuration methods that cover most variant callers as mutect2, freebayes, etc.
sci-kai
commented
1 year ago
Description of feature
In the final report, the allele fraction needs to be reported for clinical investigations. Depending on the variant caller there are different fields which could contain the allele frequency. We need proper checks for detecting the allele frequency in the VCF and some configuration methods that cover most variant callers as mutect2, freebayes, etc.