For human samples, we often need to lift VCF coordinates for example from hg19 to hg38.
Hence, we should integrate a liftOver module
I have good experience with picard liftOver, which is available as nf-core module:
https://nf-co.re/modules/picard_liftovervcf
Description of feature
For human samples, we often need to lift VCF coordinates for example from hg19 to hg38. Hence, we should integrate a liftOver module I have good experience with picard liftOver, which is available as nf-core module: https://nf-co.re/modules/picard_liftovervcf