This small PR changes the implementation of the vembrane create_fields module.
It does not add features, but makes the code more readableand flexible.
It also fixes an issue with the header name of the allele fraction, which is now consistently named "allele_fraction" independent of calculation/extraction method.
The following changes were done:
bash code from create-vembrane-fields module was implemented in python
value channels for info and format fields were removed for parameter insertion in conf/modules.config
allele_fraction formatting of vembrane string was implemented in python. The "strelka" option was removed as this was not working.
This small PR changes the implementation of the vembrane create_fields module. It does not add features, but makes the code more readableand flexible. It also fixes an issue with the header name of the allele fraction, which is now consistently named "allele_fraction" independent of calculation/extraction method. The following changes were done:
create-vembrane-fieldsmodule was implemented in pythonconf/modules.config