Very small PR that appends to PR #28.
Similarly to the allele fraction I added a parameter for the read_depth to specify this field from the VCF FORMAT column.
This enables having the same header name "read_depth" for all downstream processes, as this parameter is important and needed for example for TMB calculation. Also gives the flexibility to change this field if named different, but keeping 'DP" as default.
This is simultaneous to the allele_fraction parameter and hence works well with my local tests.
Very small PR that appends to PR #28. Similarly to the allele fraction I added a parameter for the read_depth to specify this field from the VCF FORMAT column. This enables having the same header name "read_depth" for all downstream processes, as this parameter is important and needed for example for TMB calculation. Also gives the flexibility to change this field if named different, but keeping 'DP" as default. This is simultaneous to the allele_fraction parameter and hence works well with my local tests.