Currently certain programs, e.g., bcftools within the workflow require VCF files to be bgzip compressed instead of gzip compressed, giving a specific error message if running the workflow.
An automatic detection of the compression and conversion of VCF files into bgzipped VCF files could avoid this error message and manual change.
Description of feature
Currently certain programs, e.g.,
bcftoolswithin the workflow require VCF files to be bgzip compressed instead of gzip compressed, giving a specific error message if running the workflow. An automatic detection of the compression and conversion of VCF files into bgzipped VCF files could avoid this error message and manual change.