I think it would be a good idea to integrate maftools in the variantinterpretation pipeline.
maftools is a bioconductor package to summarize, analyse and visualize MAF files. This package allows i.e. generating MAF statistics/summaries, oncoplots and studying somatic interactions. This would be a good addition to the currently generated metrics in the multiqc report. An interactive HTML report for the output of maftools can be generated with quarto.
Description of feature
I think it would be a good idea to integrate maftools in the variantinterpretation pipeline.
maftools is a bioconductor package to summarize, analyse and visualize MAF files. This package allows i.e. generating MAF statistics/summaries, oncoplots and studying somatic interactions. This would be a good addition to the currently generated metrics in the multiqc report. An interactive HTML report for the output of maftools can be generated with quarto.