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MIRA
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
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Topic model fails with single job
#46
samzarr
opened
2 weeks ago
0
NITE model prediction Error
#45
xgaoo
opened
3 months ago
0
OneHotEncoder: unexpected keyword argument
#44
xgaoo
closed
3 months ago
1
API on website not showing up
#43
justinejacobi
opened
3 months ago
2
LinAlgError: Singular matrix for some of the data
#42
Yansr3
opened
4 months ago
4
IndexError: Unknown indexer Ellipsis of type <class 'ellipsis'>
#41
WENHUAN22
closed
3 months ago
1
BayesianTuner error
#40
WENHUAN22
opened
5 months ago
1
Issue running mira.tl.get_motif_hits_in_peaks
#39
jmmuncie
closed
3 months ago
4
Using Alternative Preprocess Methods for Training RP Models
#38
shycheng
opened
6 months ago
3
ValueError: Tried to step 7921 times. The specified number of total steps is 7920
#37
ChloeHJ
opened
6 months ago
4
The least populated class in y has only 1 member, which is too few. The minimum number of groups for any class cannot be less than 2.
#36
christophechu
closed
5 months ago
5
BayesianTuner Assertion Error
#35
dfdeascanis
closed
6 months ago
2
NITE model prediction expected scalar type Double but found Float
#34
Yansr3
closed
6 months ago
3
accessibility model input data must be integers
#33
yuyanMaggieliu
opened
8 months ago
1
PicklingError: Could not pickle the task to send it to the workers.
#32
Yansr3
closed
4 months ago
1
gradient tuner overflow
#31
Yansr3
closed
6 months ago
4
Question about BayesianTuner
#30
MoLuLuMo
closed
9 months ago
5
Question for ATAC topic model
#29
MoLuLuMo
closed
10 months ago
4
Question about installation
#28
Yansr3
opened
10 months ago
12
speed
#27
bjstewart1
opened
10 months ago
0
IndexError in mira.pl.plot_stream
#26
jmmuncie
closed
1 year ago
1
Is MIRA being actively developed / maintained
#25
akundaje
closed
1 year ago
2
Input data must be raw transcript counts, represented as integers. Provided data contains non-integer values.
#24
samhkim
closed
10 months ago
5
questions for batch effect
#23
rdf1993
opened
1 year ago
7
Repeat individual tuning trials that terminate with errors?
#22
jmmuncie
opened
1 year ago
2
Error running get_learning_rate_bounds() for an Accessibility Topic Model
#21
jmmuncie
closed
1 year ago
1
suggested upsteam processing before mira
#20
KailiBio
opened
1 year ago
2
Question for multiple datasets
#19
jjacobi3
opened
1 year ago
5
MIRA code ocean capsule inaccessible
#18
nandankita
opened
1 year ago
1
"mira.tl.get_motif_hits_in_peaks" results in bin/sh 1:moods-dna.py not found when in environment
#17
Chadmiumoxid
closed
1 year ago
2
model.get_enriched_TFs returns no TFs for any topics despite motif hits in scanning
#16
alonmillet
closed
1 year ago
1
Question on transfer learning
#15
tinakeshav
closed
1 year ago
1
CVE-2007-4559 Patch
#14
TrellixVulnTeam
opened
1 year ago
0
Joint representation UMAP not appearing as in walkthrough (with supplied data)
#13
Connorr0
closed
1 year ago
3
Finding reconstructed gene by cell from different models
#12
Connorr0
closed
1 year ago
6
What is the best way to decide whether a gene is NITE or LITE regulated?
#11
shaistamadad
closed
2 years ago
1
How can peaks associated with a given gene be extracted?
#10
shaistamadad
closed
2 years ago
5
AssertionError: Graphs with multiple connected components may not be used. Subset cells to include only one connected component.
#9
shaistamadad
closed
2 years ago
1
IndexError: index 39840 is out of bounds for axis 0 with size 20479
#8
shaistamadad
closed
2 years ago
2
canonical TSS site data for training the LITE Model
#7
shaistamadad
closed
2 years ago
2
Errors when loading trained models
#6
KongMingxi
closed
2 years ago
4
mira.tl.get_distance_to_TSS(): human genome equivalent for parameter : genome_file
#5
shaistamadad
closed
2 years ago
2
Exception: Error while scanning for motifs: /bin/sh: 1: moods-dna.py: not found
#4
shaistamadad
closed
2 years ago
8
Zero motif hits when using human FA
#3
Chengwei94
closed
2 years ago
4
rna_topic_pathways(7, 500, 5, 1, True) TypeError: __init__() got an unexpected keyword argument 'location'
#2
shijianasdf
closed
2 years ago
3
Hyperparameter tuning is too slow
#1
longfeili5170
closed
2 years ago
6