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cjprybol
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Mycelia
MIT License
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Adding parallel for loops to speed up some steps
#178
jelber2
closed
2 months ago
2
Add documentation
#177
cjprybol
opened
3 months ago
0
Use conda.jl for downloading and managing containerized 3rd party software
#176
cjprybol
closed
3 months ago
1
Try dib-lab classification tools
#175
cjprybol
closed
3 months ago
1
CAMI datasets to develop against
#174
cjprybol
opened
9 months ago
0
Finish PoC joint-probility assembler + variant caller by passing my polished graphs into pggb/odgi+vg variant deconvolution flow
#173
cjprybol
closed
3 months ago
2
Increase storage efficiency of genomes with Aeron's skipmer approach
#172
cjprybol
closed
3 months ago
1
Switch to using static vectors for kmers instead of kmers.jl
#171
cjprybol
closed
1 year ago
1
CompatHelper: add new compat entry for BioAlignments at version 3, (keep existing compat)
#170
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for PrettyTables at version 2, (keep existing compat)
#169
github-actions[bot]
closed
1 year ago
0
add jellyfish counting function
#168
cjprybol
closed
1 year ago
1
CompatHelper: add new compat entry for LsqFit at version 0.13, (keep existing compat)
#167
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for FASTX at version 2, (keep existing compat)
#166
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for MultivariateStats at version 0.10, (keep existing compat)
#165
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Kmers at version 0.1, (keep existing compat)
#164
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for XLSX at version 0.8, (keep existing compat)
#163
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for StatsPlots at version 0.15, (keep existing compat)
#162
github-actions[bot]
closed
1 year ago
0
Get jupyterlab templates working
#161
cjprybol
closed
2 years ago
0
get codespace env working again
#160
cjprybol
closed
2 years ago
1
CompatHelper: add new compat entry for HTTP at version 1, (keep existing compat)
#159
github-actions[bot]
closed
1 year ago
0
Swap devcontainer to jupyter community edition
#158
cjprybol
closed
2 years ago
0
CompatHelper: add new compat entry for DocStringExtensions at version 0.9, (keep existing compat)
#157
github-actions[bot]
closed
1 year ago
0
When generating all possible AAmers, drop AAmers that start with stop codon
#156
cjprybol
closed
2 years ago
0
Load host information into neo4j taxonomy db to improve viral filtering
#155
cjprybol
closed
2 years ago
1
Use TSV for reading into & out of neo4j
#154
cjprybol
closed
2 years ago
1
Use community detection for seperating out protein communities, genome communities
#153
cjprybol
closed
3 months ago
7
Stop running weave on development notebooks for documentation
#152
cjprybol
closed
2 years ago
0
https://julialang.github.io/PackageCompiler.jl/dev/index.html
#151
cjprybol
closed
2 years ago
0
CompatHelper: add new compat entry for MultivariateStats at version 0.9, (keep existing compat)
#150
github-actions[bot]
closed
1 year ago
0
Stop putting kmer_counts datastructure into the metagraph
#149
cjprybol
opened
2 years ago
0
Replace evidence named tuples with nested dictionaries
#148
cjprybol
closed
3 months ago
1
Use degree >= 3 nodes for pre-indexing targets
#147
cjprybol
closed
3 months ago
1
finish out core genome finding algorithm for linear, circular, and multi-component graphs
#146
cjprybol
closed
3 months ago
1
Implement bi-directional A* to improve runtime of pathfinding if we're willing to create indexed distance matrix beforehand
#145
cjprybol
closed
3 months ago
1
Implement bidirectional dijkstras as my re-routing solution
#144
cjprybol
closed
2 years ago
4
CompatHelper: add new compat entry for FileIO at version 1, (keep existing compat)
#143
github-actions[bot]
closed
1 year ago
0
Refactor
#142
cjprybol
closed
2 years ago
0
Try importing dbg from bcalm, bifrost, and others in addition to megahit & spades
#141
cjprybol
closed
3 months ago
1
CompatHelper: add new compat entry for ArgParse at version 1, (keep existing compat)
#140
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for NumericIO at version 0.3, (keep existing compat)
#139
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Combinatorics at version 1, (keep existing compat)
#138
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for GenomicFeatures at version 2, (keep existing compat)
#137
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat)
#136
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat)
#135
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for StringDistances at version 0.11, (keep existing compat)
#134
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for BenchmarkTools at version 1, (keep existing compat)
#133
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for BioFetch at version 0.2, (keep existing compat)
#132
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Impute at version 0.6, (keep existing compat)
#131
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for PrettyTables at version 1, (keep existing compat)
#130
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for XLSX at version 0.7, (keep existing compat)
#129
github-actions[bot]
closed
1 year ago
0
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