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ckaus / EpiPy

A tool for fitting epidemic models.
MIT License
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Issue: References for model fitting found in the Internet #2

Closed yenarhee closed 8 years ago

yenarhee commented 8 years ago

Algorithm implemented both in R and python: https://climateecology.wordpress.com/2013/06/18/evaluating-optimization-algorithms-in-matlab-python-and-r/

see how minimize function is used :)

yenarhee commented 8 years ago

@ckaus @mitalbert

ckaus commented 8 years ago

SI Model http://healthyalgorithms.com/2010/10/19/mcmc-in-python-how-to-stick-a-statistical-model-on-a-system-dynamics-model-in-pymc/ und hier https://github.com/ckaus/EpiPy/tree/christian/src/algorithm

ckaus commented 8 years ago

the si model code is available on github: https://gist.github.com/aflaxman/626689/

ckaus commented 8 years ago

http://www.cdc.gov/mmwr/preview/mmwrhtml/su6303a1.htm?s_cid=su6303a1_w