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ckmah / bento-tools

A Python toolkit for subcellular analysis of spatial transcriptomics data
https://bento-tools.readthedocs.io/en/latest/
BSD 2-Clause "Simplified" License
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ValueError: setting an array element with a sequence. #108

Closed lemonsky123 closed 3 months ago

lemonsky123 commented 11 months ago

Hi, @ckmah . I ran into this problem when I was running the command "bt.tl.fe_fazal2019(adata)" in the example pipeline. I used the same data in your pipeline by command "adata = bt.ds.sample_data()". image image

What might cause this problem? Thanks very much!

ckmah commented 11 months ago

Hi @lemonsky123 , thanks for catching the bug! @dylanclam12 and I will take a look and keep you updated, I think it might be a problem with the how the sample data is formatted.