functional enrichment for kegg pathways is broken

ckmah / bento-tools

A Python toolkit for subcellular analysis of spatial transcriptomics data

https://bento-tools.readthedocs.io/en/latest/

BSD 2-Clause "Simplified" License

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Closed ckmah closed 4 months ago

ckmah commented 7 months ago

the collection name in the msigdb database from decoupler should be "kegg_pathways" not "KEGG"

ckmah commented 4 months ago

no longer in issue, fixed in #105