This is important for reproducibility, transparency, and building trust with users. This will also help update the future codebase in case functionality changes.
[ ] SpatialData data structure compatibility and modifications i.e. indexing
general organization of how we store computations, metadata, annotations etc.
[ ] RNAforest, RNAcoloc, RNAflux, spatial features
This is important for reproducibility, transparency, and building trust with users. This will also help update the future codebase in case functionality changes.