lp_diff_discrete() fails on small data

ckmah / bento-tools

A Python toolkit for subcellular analysis of spatial transcriptomics data

https://bento-tools.readthedocs.io/en/latest/

BSD 2-Clause "Simplified" License

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Closed dylanclam12 closed 2 weeks ago

dylanclam12 commented 2 months ago

When lp_diff_discrete() calls _lp_diff_genes() on small data, it returns None for all cells
this produces an empty dataframe that causes lp_diff_discrete() to crash