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ckmah / bento-tools

A Python toolkit for subcellular analysis of spatial transcriptomics data
https://bento-tools.readthedocs.io/en/latest/
BSD 2-Clause "Simplified" License
56 stars 6 forks source link

LP Fix #138

Closed dylanclam12 closed 2 weeks ago

dylanclam12 commented 2 months ago

Created a catch for no significant patterns found for lp_diff_discrete. Updated lp tests to use the sample MERFISH dataset and added a test to catch no significant patterns in the small_data dataset.

dylanclam12 commented 2 months ago

Fixes #136

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 86.79245% with 21 lines in your changes missing coverage. Please review.

Project coverage is 66.24%. Comparing base (c343f79) to head (b3e38d4). Report is 15 commits behind head on master.

Files Patch % Lines
bento/plotting/_lp.py 14.28% 6 Missing :warning:
bento/_utils.py 44.44% 5 Missing :warning:
bento/plotting/_signatures.py 0.00% 4 Missing :warning:
bento/plotting/_multidimensional.py 0.00% 3 Missing :warning:
bento/tools/_lp.py 95.23% 2 Missing :warning:
bento/tools/_composition.py 50.00% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #138 +/- ## ========================================== + Coverage 62.88% 66.24% +3.36% ========================================== Files 40 40 Lines 2258 2314 +56 ========================================== + Hits 1420 1533 +113 + Misses 838 781 -57 ```

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ckmah commented 2 weeks ago

use new spatialdata multitable api, addresses #140