ckmah / bento-tools

A Python toolkit for subcellular analysis of spatial transcriptomics data
https://bento-tools.readthedocs.io/en/latest/
BSD 2-Clause "Simplified" License
56 stars 6 forks source link

V2.0 #96

Closed ckmah closed 1 year ago

ckmah commented 1 year ago

Major release aligned with version 2 of the preprint 🎉

Overall goals for this upgrade:

codecov-commenter commented 1 year ago

Codecov Report

Patch coverage: 76.38% and project coverage change: +10.14 :tada:

Comparison is base (92cf5ce) 61.70% compared to head (90f4ab4) 71.84%.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #96 +/- ## =========================================== + Coverage 61.70% 71.84% +10.14% =========================================== Files 24 35 +11 Lines 1290 2252 +962 =========================================== + Hits 796 1618 +822 - Misses 494 634 +140 ``` | [Impacted Files](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah) | Coverage Δ | | |---|---|---| | [bento/io/\_io.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vaW8vX2lvLnB5) | `17.39% <7.69%> (-8.50%)` | :arrow_down: | | [bento/tools/\_flux\_enrichment.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vdG9vbHMvX2ZsdXhfZW5yaWNobWVudC5weQ==) | `22.41% <22.41%> (ø)` | | | [bento/tools/\_composition.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vdG9vbHMvX2NvbXBvc2l0aW9uLnB5) | `27.02% <27.02%> (ø)` | | | [bento/plotting/\_multidimensional.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vcGxvdHRpbmcvX211bHRpZGltZW5zaW9uYWwucHk=) | `53.42% <53.42%> (ø)` | | | [bento/tools/\_lp.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vdG9vbHMvX2xwLnB5) | `39.16% <61.36%> (-2.06%)` | :arrow_down: | | [bento/plotting/\_layers.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vcGxvdHRpbmcvX2xheWVycy5weQ==) | `62.16% <62.16%> (ø)` | | | [bento/plotting/\_utils.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vcGxvdHRpbmcvX3V0aWxzLnB5) | `84.21% <66.66%> (ø)` | | | [bento/tools/\_neighborhoods.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vdG9vbHMvX25laWdoYm9yaG9vZHMucHk=) | `67.30% <67.30%> (ø)` | | | [bento/plotting/\_plotting.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vcGxvdHRpbmcvX3Bsb3R0aW5nLnB5) | `70.07% <68.21%> (+54.92%)` | :arrow_up: | | [bento/plotting/\_lp.py](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah#diff-YmVudG8vcGxvdHRpbmcvX2xwLnB5) | `70.00% <70.00%> (ø)` | | | ... and [25 more](https://codecov.io/gh/ckmah/bento-tools/pull/96?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Clarence+Mah) | |

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