x,y,z ?mix? in 3D Image Segmentation demo

[ClementCaporal]

Hello, thank you for your work.

In case it is useful to report this, I cannot reproduce https://github.com/clEsperanto/pyclesperanto_prototype/blob/master/demo/segmentation/Segmentation_3D.ipynb under "Intensity and background correction" without the x,y slice being cropped.

Solved by a_slice = cle.create([resampled.shape[1], resampled.shape[0]]) -> a_slice = cle.create([resampled.shape[1], resampled.shape[2]])

[haesleinhuepf]

Hi @ClementCaporal ,

thanks for the report! I think you are right, I have the suspion that the code should be indeed cle.create([resampled.shape[1], resampled.shape[2]]). But I'm not sure why my result looks different than yours. I just ran the notebook (with the code as it was) and my result looks like this:

Why do your input images have a different size?

Thanks!

Best, Robert

[haesleinhuepf]

Ok, I'm guessing you applied it to the original dataset.

I just updated the notebook. If you find another issue of that kind, please let me know!

Thanks for your feedback! :-)