Currently, the quality_control function does not remove any cells or genes. This is most likely the case because subsetting of the AnnData object cannot be done in place. Therefore, the option to perform QC in place should be removed, instead always returning an AnnData object.
Currently, the
quality_controlfunction does not remove any cells or genes. This is most likely the case because subsetting of theAnnDataobject cannot be done in place. Therefore, the option to perform QC in place should be removed, instead always returning anAnnDataobject.