Command line tool

[piotr-gawron]

Dear @claczny,

This pull request includes following changes:

• implementation of command line options adapted from the old branch (ac736cba87bc64d7a2143b4362972afdc4f3c1c7).
• bug fix that was introduced when removing binary libraries. Apparently mtj library wasn't used in a clean way. I think you downloaded sources, modified it a bit, packed into jar and included in VizBin compiled version. Am I right? I reversed engineered the code and was able to identify the changes. I extracted them into separate class: https://github.com/claczny/VizBin/blob/command-line-tool/src/interface/VizBin/src/no/uib/cipr/matrix/SVDCustom.java (I know it's a bit hacky, but I think it's still better than previous approach). Can you confirm that you introduced only those changes:
  • https://github.com/claczny/VizBin/blob/command-line-tool/src/interface/VizBin/src/no/uib/cipr/matrix/SVDCustom.java#L89
  • https://github.com/claczny/VizBin/blob/command-line-tool/src/interface/VizBin/src/no/uib/cipr/matrix/SVDCustom.java#L97
  • https://github.com/claczny/VizBin/blob/command-line-tool/src/interface/VizBin/src/no/uib/cipr/matrix/SVDCustom.java#L107 I remember seeing something like that in the past, but it wasn't me who developed it so I'm not sure.

This pull request was re-based on https://github.com/claczny/VizBin/pull/45. So please review/merge https://github.com/claczny/VizBin/pull/45 before this.

Closes #26

[claczny]

The PCA-related work dates back quite some time, hence, TBH, I do not remember the specific details.