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cladteam / CCDA_OMOP_by_Python

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Ask Matt about Conda vs Mamba etc. #111

Open chrisroederucdenver opened 2 weeks ago

chrisroederucdenver commented 2 weeks ago

Workspaces are getting a warning

This workspace has disabled managed Conda environments. This feature will soon be force-enabled. If managed environments are incompatible with your use case, please file a Foundry issue.

What does this mean regarding importing lxml and duckdb?

chrisroederucdenver commented 2 days ago

reply from Matt: image

chrisroederucdenver commented 2 days ago

the linux diff command and CPT4 are outstanding items

chrisroederucdenver commented 1 day ago

To get pakcages to re-install you have to enable conda managed environments and restart your workspace. Then when you install stuff it updates a file, .envs/maestro/meta.yaml so that later restarts install your stuff. Stuff can be either python or linux packages. Vim or lxml.

to make this part of a pipeline that kicks off things downstream from it, it has to output some data. I have a python script that creates a log file, the product of the workspace. I'm hoping to use that to trigger downstream workspace executions in lineage. The downstream one in the case of CCDA-tools would be the snooped concepts.