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cladteam / CCDA_OMOP_by_Python

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change default value for race and ethnicity to 8552 instead of 0 #150

Closed chrisroederucdenver closed 5 hours ago

chrisroederucdenver commented 6 hours ago

0 is no matching concept, and we're currently using it for null, when 8552 for Unknown is a better choice.

chrisroederucdenver commented 6 hours ago

no such value for ethnicity, 8551 for gender, 8552 for race.

chrisroederucdenver commented 5 hours ago

fixed, we're getting values on all sample files for gender. We never get a null on ethnicity, but the mapp doesn't currently map them. Race also has unmapped values. Both of these end up as no matching concept, 0. This is because the codemap doesn't include 2.16.840.1.113883.6.238.

see #146

chrisroederucdenver commented 5 hours ago

The concepts above are invalid.

chrisroederucdenver commented 5 hours ago

basically a duplicate of #144