Create omop person visit and condition domain with its data lineage to show the overall pipeline steps.

cladteam / fhir2omop-pm

Repo for tracking overall FHIR to OMOP mapping project tasks

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Create omop person visit and condition domain with its data lineage to show the overall pipeline steps. #24

Open stephanieshong opened 1 month ago

stephanieshong commented 1 month ago

Establish a overall pipeline infrastructure for transforming and mapping FHIR resource data into appropriate OMOP CDM domains. -generate code_map_walk to translate code/code system to OMOP concept ids.

generate omop domain pk using the source submitted id values.
resolve id conflicts and link fk values.

stephanieshong commented 1 month ago

Implemented pipeline steps and created OMOP person, encounter, and condition domain.