clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Error when trying to generate kymo for single channel #114

Closed clairelbromley closed 7 years ago

clairelbromley commented 7 years ago

Building kymographs for 250217, Embryo 1 downwards, cut 1 Saving overlay images... Plotting kymographs for E1 C1 took 70.167682 seconds

result =

kym_number: 1

Index exceeds matrix dimensions.

Error in extractQuantitativeKymographData (line 30) kym_segment = squeeze(kyms(first_frame-1:first_frame + segment_len_frames - 1,:,kpos))';

Error in cziFig>buttonGenerateKym_Callback (line 309) results = extractQuantitativeKymographData(kymographs, curr_metadata, userOptions);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in cziFig (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)cziFig('buttonGenerateKym_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uicontrol Callback

clairelbromley commented 7 years ago

This is to do with the quantitative analysis time Make sure that it is shorter than the time post- bleaching