clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Problem using viewer- up side of kymographs wont load and get following error message #117

Open clairelbromley opened 6 years ago

clairelbromley commented 6 years ago

Error using handle.handle/set Invalid or deleted object.

Error in viewerMain>move_selected_point (line 715) set(handles.kymLines(ax, closest_kymline), 'Color', 'g');

Error in viewerMain>axUpSpeedVPosition_ButtonDownFcn (line 668) handles = move_selected_point(closest);

Error while evaluating line ButtonDownFcn

MException with properties:

identifier: 'MATLAB:samelen'
   message: 'Vectors must be the same lengths.'
     cause: {0x1 cell}
     stack: [2x1 struct]

move_selected_point 801

axUpSpeedVPosition_ButtonDownFcn 668

MException with properties:

identifier: 'MATLAB:samelen'
   message: 'Vectors must be the same lengths.'
     cause: {0x1 cell}
     stack: [2x1 struct]

move_selected_point 801

axUpSpeedVPosition_ButtonDownFcn 668

Date = 010817, Embryo = 10, Cut = 1 MException with properties:

identifier: 'MATLAB:emptyDotAssignment'
   message: 'A dot name structure assignment is illegal when the structure is empty.  Use a subscript on the structure.'
     cause: {}
     stack: [5x1 struct]

genericInclude 1717

listData_Callback 511

gui_mainfcn 95

viewerMain 42

@(hObject,eventdata)viewerMain('listData_Callback',hObject,eventdata,guidata(hObject)) 0

clairelbromley commented 6 years ago

I'm currently on the lumen opening basal membrane branch in sourcetree - but imagine that this shouldn't be a problem as NcadKroxManualTool is the other one

clairelbromley commented 6 years ago

Warning: Range cannot be used in 'basic' mode. The entire sheet will be loaded.

In xlsread at 200 In getExperimentMetadata at 12 In viewerMain>menuLoadMetadata_Callback at 1629 In gui_mainfcn at 95 In viewerMain at 42 In @(hObject,eventdata)viewerMain('menuLoadMetadata_Callback',hObject,eventdata,guidata(hObject)) In viewerMain>menuLoadData_Callback at 213 In gui_mainfcn at 95 In viewerMain at 42 In @(hObject,eventdata)viewerMain('menuLoadData_Callback',hObject,eventdata,guidata(hObject)) Date = 010817, Embryo = 1, Cut = 1 MException with properties:

identifier: 'MATLAB:emptyDotAssignment'
   message: 'A dot name structure assignment is illegal when the structure is empty.  Use a subscript on the structure.'
     cause: {}
     stack: [9x1 struct]

genericInclude 1717

listData_Callback 511

gui_mainfcn 95

viewerMain 42

@(hObject,eventdata)viewerMain('listData_Callback',hObject,eventdata,guidata(hObject)) 0

menuLoadData_Callback 220

gui_mainfcn 95

viewerMain 42

@(hObject,eventdata)viewerMain('menuLoadData_Callback',hObject,eventdata,guidata(hObject)) 0

clairelbromley commented 6 years ago

Index exceeds matrix dimensions.

Error in getExperimentMetadata (line 28) xm.cutNumber = str2double(A{3});

Error in viewerMain>menuLoadMetadata_Callback (line 1628) handles.experimentMetadata = getExperimentMetadata(handles.metadataPath);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('menuLoadMetadata_Callback',hObject,eventdata,guidata(hObject))

Error in viewerMain>menuLoadData_Callback (line 213) callback(handles.listData, []);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('menuLoadData_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uimenu Callback

clairelbromley commented 6 years ago

Seem unable to get the sheets to load anymore

I have put a subset of files and the relevant excel spreadsheets onto googledrive Please note that metadata 2017boundaries only has the sheet for 010817

clairelbromley commented 6 years ago

I'm not sure if I'll be on the same branch of sourcetree as you are - so maybe it will be an easy thing to solve!

clairelbromley commented 6 years ago

https://drive.google.com/drive/folders/1rsfH5zyF1GMfSbVqnwY9IKb4vawXUGIA?usp=sharing