If tissue aligned to vertical axis, use alternative methods for AP lengths

clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.

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If tissue aligned to vertical axis, use alternative methods for AP lengths #120

Open dougkelly88 opened 6 years ago

dougkelly88 commented 6 years ago

Generate AP length for each position along the width of the tissue - use rhombomere masks and fact that we're aligned such that the tissue midline is vertical to generate these lengths and thence stats (mean, median, max, min, sd)